Machine learning in bioinformatics

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Where to find it

Information & Library Science Library

Call Number
QH324.2 .M33 2009
Status
Available

Summary

An introduction to machine learning methods and their applications to problems in bioinformatics

Machine learning techniques are increasingly being used to address problems in computational biology and bioinformatics. Novel computational techniques to analyze high throughput data in the form of sequences, gene and protein expressions, pathways, and images are becoming vital for understanding diseases and future drug discovery. Machine learning techniques such as Markov models, support vector machines, neural networks, and graphical models have been successful in analyzing life science data because of their capabilities in handling randomness and uncertainty of data noise and in generalization.

From an internationally recognized panel of prominent researchers in the field, Machine Learning in Bioinformatics compiles recent approaches in machine learning methods and their applications in addressing contemporary problems in bioinformatics. Coverage includes: feature selection for genomic and proteomic data mining; comparing variable selection methods in gene selection and classification of microarray data; fuzzy gene mining; sequence-based prediction of residue-level properties in proteins; probabilistic methods for long-range features in biosequences; and much more.

Machine Learning in Bioinformatics is an indispensable resource for computer scientists, engineers, biologists, mathematicians, researchers, clinicians, physicians, and medical informaticists. It is also a valuable reference text for computer science, engineering, and biology courses at the upper undergraduate and graduate levels.

Contents

  • Foreword p. ix
  • Preface p. xi
  • Contributors p. xvii
  • 1 Feature Selection for Genomic and Proteomic Data Mining p. 1 Sun-Yuan Kung and Man-Wai Mak
  • 2 Comparing and Visualizing Gene Selection and Classification Methods for Microarray Data p. 47 Rajiv S. Menjoge and Roy E. Welsch
  • 3 Adaptive Kernel Classifiers Via Matrix Decomposition Updating for Biological Data Analysis p. 69 Hyunsoo Kim and Haesun Park
  • 4 Bootstrapping Consistency Method for Optimal Gene Selection from Microarray Gene Expression Data for Classification Problems p. 89 Shaoning Pang and Ilkka Havukkala and Yingjie Hu and Nikola Kasabov
  • 5 Fuzzy Gene Mining: A Fuzzy-Based Framework for Cancer Microarray Data Analysis p. 111 Zhenyu Wang and Vasile Palade
  • 6 Feature Selection for Ensemble Learning and Its Application p. 135 Guo-Zheng Li and Jack Y. Yang
  • 7 Sequence-Based Prediction of Residue-Level Properties in Proteins p. 157 Shandar Ahmad and Yemlembam Hemjit Singh and Marcos J. Arauzo-Bravo and Akinori Sarai
  • 8 Consensus Approaches to Protein Structure Prediction p. 189 Dongbo Bu and ShuaiCheng Li and Xin Gao and Libo Yu and Jinbo Xu and Ming Li
  • 9 Kernel Methods in Protein Structure Prediction p. 209 Jayavardhana Gubbi and Alistair Shilton and Marimuthu Palaniswami
  • 10 Evolutionary Granular Kernel Trees for Protein Subcellular Location Prediction p. 229 Bo Jin and Yan-Qing Zhang
  • 11 Probabilistic Models for Long-Range Features in Biosequences p. 241 Li Liao
  • 12 Neighborhood Profile Search for Motif Refinement p. 263 Chandan K. Reddy and Yao-Chung Weng and Hsiao-Dong Chiang
  • 13 Markov/Neural Model for Eukaryotic Promoter Recognition p. 283 Jagath C. Rajapakse and Sy Loi Ho
  • 14 Eukaryotic Promoter Detection Based on Word and Sequence Feature Selection and Combination p. 301 Xudong Xie and Shuanhu Wu and Hong Yan
  • 15 Feature Characterization and Testing of Bidirectional Promoters in the Human Genome-Significance and Applications in Human Genome Research p. 321 Mary Q. Yang and David C. King and Laura L. Elnitski
  • 16 Supervised Learning Methods for MicroRNA Studies p. 339 Byoung-Tak Zhang and Jin-Wu Nam
  • 17 Machine Learning for Computational Haplotype Analysis p. 367 Phil H. Lee and Hagit Shatkay
  • 18 Machine Learning Applications in SNP-Disease Association Study p. 389 Pritam Chanda and Aidong Zhang and Murali Ramanathan
  • 19 Nanopore Cheminformatics-Based Studies of Individual Molecular Interactions p. 413 Stephen Winters-Hilt
  • 20 An Information Fusion Framework for Biomedical Informatics p. 431 Srivatsava R. Ganta and Anand Narasimhamurthy and Jyotsna Kasturi and Raj Acharya
  • Index p. 453

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