Computational intelligence in biomedicine and bioinformatics : current trends and applications

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Call Number
Q342 .C86 2008
Status
Available

Summary

For the past decade or so, Computational Intelligence (CI) has been an - tremely "hot" topic amongst researchers working in the ?elds of biomedicine and bioinformatics. There are many successful applications of CI in such areas ascomputationalgenomics, predictionofgeneexpression, proteinstructure, and protein-protein interactions, modeling of evolution, or neuronal systems mod- ing and analysis. However, there still are many problems in biomedicine and bioinformatics that are in desperate need of advanced and e?cient compu- tional methodologies to deal with tremendous amounts of data so prevalent in those kinds of researchpursuits. Unfortunately, scientists in both these ?elds are very often unaware of the abundance of computational techniques that could be put to use to help them analyze and understand the data underlying their research inquiries. On the other hand, computational intelligence practitioners are often unfamiliar with the particular problems that their algorithms could be successfully applied for. The separation between the two worlds is partially caused by the use of di?erent languages in these two spheres of science, but also by a relatively small number of publications devoted solely to the purpose of facilitating the exchange of new computational algorithms and methodologies on one hand, and the needs of the realms of biomedicine and bioinformatics on the other. Inordertohelp?llthegapbetweenthescientistsonbothsidesofthisspectrum, wehavesolicitedcontributionsfromresearchersactivelyapplyingcomputational intelligencetechniquestoimportantproblemsinbiomedicineandbioinformatics. The purpose of this book is to provide an overview of powerful state-of-the-art methodologiesthatarecurrentlyutilizedforbiomedicine-and/orbioinformati- orientedapplications, sothatresearchersworkinginthose?eldscouldlearnofnew methodstohelpthemtackletheirproblems. Ontheotherhand, wealsohopethat the CI community will ?nd this book useful by discovering a new and intriguing area of applications.

Contents

  • Part I Techniques and Methodologies
  • 1 Computational Intelligence in Solving Bioinformatics Problems: Reviews, Perspectives, and Challenges p. 3 Aboul-Ella Hassanien and Mariofanna G. Milanova and Tomasz G. Smolinski and Ajith Abraham
  • 2 Data Mining and Genetic Algorithms: Finding Hidden Meaning in Biological and Biomedical Data p. 49 Christopher M. Taylor and Arvin Agah
  • 3 The Use of Rough Sets as a Data Mining Tool for Experimental Bio-data p. 69 Ray R. Hashemi and Alexander A. Tyler and Azita A. Bahrami
  • 4 Integrating Local and Personalised Modelling with Global Ontology Knowledge Bases for Biomedical and Bioinformatics Decision Support p. 93 Nikola Kasabov and Qun Song and Lubica Benuskova and Paulo Gottgtroy and Vishal Jain and Anju Verma and Ilkka Havukkala and Elaine Rush and Russel Pears and Alex Tjahjana and Yingjie Hu and Stephen MacDonell
  • Part II Computational Intelligence in Biomedicine
  • 5 Data-Mining of Time-Domain Features from Neural Extracellular Field Data p. 119 Samuel Neymotin and Daniel J. Uhlrich and Karen A. Manning and William W. Lytton
  • 6 Analysis of Spectral Data in Clinical Proteomics by Use of Learning Vector Quantizers p. 141 Frank-Michael Schleif and Thomas Villmann and Barbara Hammer and Martijn van der Werff and A. Deelder and R. Tollenaar
  • 7 Computational Intelligence Techniques in Image Segmentation for Cytopathology p. 169 Andrzej Obuchowicz and Maciej Hrebien and Tomasz Nieczkowski and Andrzej Marciniak
  • 8 Curvature Flow Based 3D Surface Evolution Model for Polyp Detection and Visualization in CT Colonography p. 201 Dongqing Chen and Aly A. Farag and M. Sabry Hassouna and Robert L. Falk and Gerald W. Dryden
  • 9 Assisting Cancer Diagnosis with Fuzzy Neural Networks p. 223 Feng Chu and Wei Xie and Farideh Fazayeli and Lipo Wang
  • 10 Computational Intelligence in Clinical Oncology: Lessons Learned from an Analysis of a Clinical Study p. 237 B. Haibe-Kains and C. Desmedt and S. Loi and M. Delorenzi and C. Sotiriou and G. Bontempi
  • Part III Computational Intelligence in Bioinformatics
  • 11 Artificial Immune Systems in Bioinformatics p. 271 Vitoantonio Bevilacqua and Filippo Menolascina and Roberto T. Alves and Stefania Tommasi and Giuseppe Mastronardi and Myriam Delgado and Angelo Paradiso and Giuseppe Nicosia and Alex A. Freitas
  • 12 Evolutionary Algorithms for the Protein Folding Problem: A Review and Current Trends p. 297 Heitor Silverio Lopes
  • 13 Flexible Protein Folding by Ant Colony Optimization p. 317 Xiao-Min Hu and Jun Zhang and Yun Li
  • 14 Considering Stem-Loops as Sequence Signals for Finding Ribosomal RNA Genes p. 337 Kirt M. Noel and Kay C. Wiese
  • 15 Power-Law Signatures and Patchiness in Genechip Oligonucleotide Microarrays p. 359 Radhakrishnan Nagarajan
  • 16 Case Study: Structure and Function Prediction of a Protein with No Functionally Characterized Homolog p. 379 Vijayaraj Nagarajan and Mohamed O. Elasri
  • 17 From Biomedical Literature to Knowledge: Mining Protein-Protein Interactions p. 397 Deyu Zhou and Yulan He and Chee Keong Kwoh
  • Index p. 423
  • Author Index p. 431

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